Structural Complex
Chemical ID: PRD_002489
IUPAC Name: lipid II mimetic, LPATA: Thr-in conformation
Formal Charge:
Type: peptide-like
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C(NCC(=O)N1CCCC1)c1ccccc1
InChI: InChI=1S/C13H16N2O2/c16-12(15-8-4-5-9-15)10-14-13(17)11-6-2-1-3-7-11/h1-3,6-7H,4-5,8-10H2,(H,14,17)
InChI Key: CXSUVQOSBPNFDM-UHFFFAOYSA-N
Physiochemical Descriptor:
Formula: C53 H85 N14 O16
Molecular weight: 1174.326
Hydrogen Bond Acceptor: 17
Hydrogen Bond Donor: 15
Rotatable Bonds: 45
Heavy Atoms: 83
Systematic name
Program Version Descriptor
ACDLabs 12.01 N-acetyl-L-alanyl-D-alpha-glutaminyl-6-{[(2R)-2-{[N-(2-aminobenzoyl)-L-leucyl-L-prolyl-L-alanyl-L-threonyl-L-alanyl]amino}propanoyl]azaniumyl}-L-norleucyl-D-alanyl-D-alanine
OpenEye OEToolkits 2.0.7 [(5~{S})-5-[[(4~{R})-4-[[(2~{S})-2-acetamidopropanoyl]amino]-5-azanyl-5-oxidanylidene-pentanoyl]amino]-6-oxidanylidene-6-[[(2~{R})-1-oxidanylidene-1-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]propan-2-yl]amino]hexyl]-[(2~{S})-2-[[(2~{S})-2-[[(2~{S},3~{R})-2-[[(2~{S})-2-[[(2~{S})-1-[(2~{S})-2-[(2-aminophenyl)carbonylamino]-4-methyl-pentanoyl]pyrrolidin-2-yl]carbonylamino]propanoyl]amino]-3-oxidanyl-butanoyl]amino]propanoyl]amino]propanoyl]azanium
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=C(NC(C)C(=O)NC(C(=O)NC(C)C(=O)NC(C)C(=O)[NH2+]CCCCC(NC(=O)CCC(NC(=O)C(C)NC(C)=O)C(N)=O)C(=O)NC(C)C(=O)NC(C)C(=O)O)C(C)O)C1CCCN1C(=O)C(CC(C)C)NC(=O)c1ccccc1N
InChI InChI 1.06 InChI=1S/C53H84N14O16/c1-25(2)24-38(65-48(77)34-16-11-12-17-35(34)54)52(81)67-23-15-19-39(67)50(79)60-30(7)47(76)66-41(32(9)68)51(80)61-29(6)44(73)58-26(3)43(72)56-22-14-13-18-37(49(78)59-28(5)45(74)62-31(8)53(82)83)63-40(70)21-20-36(42(55)71)64-46(75)27(4)57-33(10)69/h11-12,16-17,25-32,36-39,41,68H,13-15,18-24,54H2,1-10H3,(H2,55,71)(H,56,72)(H,57,69)(H,58,73)(H,59,78)(H,60,79)(H,61,80)(H,62,74)(H,63,70)(H,64,75)(H,65,77)(H,66,76)(H,82,83)/p+1/t26-,27-,28+,29-,30-,31+,32+,36+,37-,38-,39-,41-/m0/s1
InChIKey InChI 1.06 MWNSMXOOHKKRDC-QYUXVVCRSA-O
SMILES_CANONICAL CACTVS 3.385 CC(C)C[C@H](NC(=O)c1ccccc1N)C(=O)N2CCC[C@H]2C(=O)N[C@@H](C)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)[NH2+]CCCC[C@H](NC(=O)CC[C@@H](NC(=O)[C@H](C)NC(C)=O)C(N)=O)C(=O)N[C@H](C)C(=O)N[C@H](C)C(O)=O
SMILES CACTVS 3.385 CC(C)C[CH](NC(=O)c1ccccc1N)C(=O)N2CCC[CH]2C(=O)N[CH](C)C(=O)N[CH]([CH](C)O)C(=O)N[CH](C)C(=O)N[CH](C)C(=O)[NH2+]CCCC[CH](NC(=O)CC[CH](NC(=O)[CH](C)NC(C)=O)C(N)=O)C(=O)N[CH](C)C(=O)N[CH](C)C(O)=O
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 C[C@H]([C@@H](C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)[NH2+]CCCC[C@@H](C(=O)N[C@H](C)C(=O)N[C@H](C)C(=O)O)NC(=O)CC[C@H](C(=O)N)NC(=O)[C@H](C)NC(=O)C)NC(=O)[C@H](C)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NC(=O)c2ccccc2N)O
SMILES OpenEye OEToolkits 2.0.7 CC(C)CC(C(=O)N1CCCC1C(=O)NC(C)C(=O)NC(C(C)O)C(=O)NC(C)C(=O)NC(C)C(=O)[NH2+]CCCCC(C(=O)NC(C)C(=O)NC(C)C(=O)O)NC(=O)CCC(C(=O)N)NC(=O)C(C)NC(=O)C)NC(=O)c2ccccc2N