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Structural Complex
Chemical ID: OYE
IUPAC Name: bn7GpppG mRNA 5' cap analog
Formal Charge: -2
Type: non-polymer
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]cnc2c1ncn2[C@H]1CC[C@@H](CO[PH](=O)O[PH](=O)O[PH](=O)OC[C@@H]2CC[C@H](n3c[n+](Cc4ccccc4)c4c(=O)nc[nH]c43)O2)O1
InChI: InChI=1S/C27H31N8O11P3/c36-26-22-24(28-13-30-26)34(15-32-22)20-8-6-18(43-20)11-41-47(38)45-49(40)46-48(39)42-12-19-7-9-21(44-19)35-16-33(10-17-4-2-1-3-5-17)23-25(35)29-14-31-27(23)37/h1-5,13-16,18-21,47-49H,6-12H2,(H-,28,29,30,31,36,37)/p+1/t18-,19-,20+,21+/m0/s1
InChI Key: XJXMVQAYSHNOAN-UWHLTILDSA-O
Physiochemical Descriptor:
Formula: C27 H31 N10 O18 P3
Molecular weight: 876.513
Hydrogen Bond Acceptor: 25
Hydrogen Bond Donor: 8
Rotatable Bonds: 20
Heavy Atoms: 58
Systematic name
Program Version Descriptor
OpenEye OEToolkits 2.0.7 [[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-6-oxidanylidene-7-(phenylmethyl)-3~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] phosphate
Chemical Descriptors
Type Program Version Descriptor
InChI InChI 1.03 InChI=1S/C27H33N10O18P3/c28-26-31-20-14(22(42)33-26)30-9-36(20)24-18(40)16(38)12(52-24)7-50-56(44,45)54-58(48,49)55-57(46,47)51-8-13-17(39)19(41)25(53-13)37-10-35(6-11-4-2-1-3-5-11)15-21(37)32-27(29)34-23(15)43/h1-5,9-10,12-13,16-19,24-25,38-41H,6-8H2,(H8-,28,29,31,32,33,34,42,43,44,45,46,47,48,49)/p-2/t12-,13-,16-,17-,18-,19-,24-,25-/m1/s1
InChIKey InChI 1.03 DBIWUCQKTGTGGL-JIUDXVAXSA-L
SMILES_CANONICAL CACTVS 3.385 NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5c[n+](Cc6ccccc6)c7C(=O)N=C(N)Nc57)[C@@H](O)[C@H]3O
SMILES CACTVS 3.385 NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5c[n+](Cc6ccccc6)c7C(=O)N=C(N)Nc57)[CH](O)[CH]3O
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 c1ccc(cc1)C[n+]2cn(c3c2C(=O)N=C(N3)N)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OC[C@@H]5[C@H]([C@H]([C@@H](O5)n6cnc7c6N=C(NC7=O)N)O)O)O)O
SMILES OpenEye OEToolkits 2.0.7 c1ccc(cc1)C[n+]2cn(c3c2C(=O)N=C(N3)N)C4C(C(C(O4)COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OCC5C(C(C(O5)n6cnc7c6N=C(NC7=O)N)O)O)O)O
Chemical Database Mapping
Database Reference ID
PubChem 146035916
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