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Summary
Structure Feature
Experiment
Ligands & Environment
6XL8
pdb_00006xl8
10.2210/pdb6xl8/pdb
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A3P
IOD
NA
NPO
Atom Indices
Bond Indices
Highlight Substructure
Structural Complex
Chemical ID:
A3P
IUPAC Name:
ADENOSINE-3'-5'-DIPHOSPHATE
Formal Charge:
0
Type:
RNA LINKING
Substructure
Substruture Type:
MurckoScaffold
SMILES:
c1ncc2ncn([C@H]3CCCO3)c2n1
InChI:
InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1
InChI Key:
DAKONNSVCLKUJN-MRVPVSSYSA-N
Physiochemical Descriptor:
Formula:
C10 H15 N5 O10 P2
Molecular weight:
427.201
Hydrogen Bond Acceptor:
15
Hydrogen Bond Donor:
6
Rotatable Bonds:
12
Heavy Atoms:
27
Systematic name
Program
Version
Descriptor
ACDLabs
10.04
adenosine 3',5'-bis(dihydrogen phosphate)
OpenEye OEToolkits
1.5.0
[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate
Chemical Descriptors
Type
Program
Version
Descriptor
SMILES
ACDLabs
10.04
O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O
SMILES_CANONICAL
CACTVS
3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H]3O
SMILES
CACTVS
3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]3O
SMILES_CANONICAL
OpenEye OEToolkits
1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)OP(=O)(O)O)O)N
SMILES
OpenEye OEToolkits
1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)OP(=O)(O)O)O)N
InChI
InChI
1.03
InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7(25-27(20,21)22)4(24-10)1-23-26(17,18)19/h2-4,6-7,10,16H,1H2,(H2,11,12,13)(H2,17,18,19)(H2,20,21,22)/t4-,6-,7-,10-/m1/s1
InChIKey
InChI
1.03
WHTCPDAXWFLDIH-KQYNXXCUSA-N
Chemical Database Mapping
Database
Reference ID
DrugBank
DB01812
ChEMBL
CHEMBL574817
PubChem
159296
ChEBI
17985
ZINC
ZINC000004228234
SureChEMBL
SCHEMBL42104
HMDB
HMDB0000061
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