ISDA: 6SQW

Atom Indices

Bond Indices

Highlight Substructure

Structural Complex

Chemical ID: 5CM

IUPAC Name: 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE

Formal Charge: 0

Type: DNA LINKING

Substructure

Substruture Type: MurckoScaffold

SMILES: O=c1ncccn1[C@H]1CCCO1

InChI: InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1

InChI Key: AKXKPKRAUWTVBW-SSDOTTSWSA-N

Physiochemical Descriptor:

Formula: C10 H16 N3 O7 P

Molecular weight: 321.224

Hydrogen Bond Acceptor: 10

Hydrogen Bond Donor: 4

Rotatable Bonds: 9

Heavy Atoms: 21

Systematic name

Program	Version	Descriptor
ACDLabs	10.04	2'-deoxy-5-methylcytidine 5'-(dihydrogen phosphate)
OpenEye OEToolkits	1.5.0	[(2R,3S,5R)-5-(4-amino-5-methyl-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	O=C1N=C(N)C(=CN1C2OC(C(O)C2)COP(=O)(O)O)C
SMILES_CANONICAL	CACTVS	3.341	CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N=C1N
SMILES	CACTVS	3.341	CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)N=C1N
SMILES_CANONICAL	OpenEye OEToolkits	1.5.0	CC1=CN(C(=O)N=C1N)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
SMILES	OpenEye OEToolkits	1.5.0	CC1=CN(C(=O)N=C1N)C2CC(C(O2)COP(=O)(O)O)O
InChI	InChI	1.03	InChI=1S/C10H16N3O7P/c1-5-3-13(10(15)12-9(5)11)8-2-6(14)7(20-8)4-19-21(16,17)18/h3,6-8,14H,2,4H2,1H3,(H2,11,12,15)(H2,16,17,18)/t6-,7+,8+/m0/s1
InChIKey	InChI	1.03	RGDVNLHBCKWZDA-XLPZGREQSA-N

Chemical Database Mapping