Structural Complex
Chemical ID: E9D
IUPAC Name: Heteroaryldihydropyrimidine tetramethylrodamine
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: [N+]=c1ccc2c(-c3cccc(C(=O)NCCCC(=O)N4CCN(Cc5cc(-c6ccccc6)nc(-c6ccccn6)n5)CC4)c3)c3ccccc3oc-2c1
InChI: InChI=1S/C44H38N7O3/c45-33-18-19-36-40(27-33)54-39-16-5-4-14-35(39)42(36)31-12-8-13-32(26-31)44(53)47-21-9-17-41(52)51-24-22-50(23-25-51)29-34-28-38(30-10-2-1-3-11-30)49-43(48-34)37-15-6-7-20-46-37/h1-8,10-16,18-20,26-28H,9,17,21-25,29H2,(H,47,53)/q+1
InChI Key: JNDORUZODDRFHQ-UHFFFAOYSA-N
Physiochemical Descriptor:
Formula: C51 H48 Cl F N8 O7
Molecular weight: 939.428
Hydrogen Bond Acceptor: 12
Hydrogen Bond Donor: 1
Rotatable Bonds: 18
Heavy Atoms: 68
Systematic name
Program Version Descriptor
ACDLabs 12.01 (2P)-4-{[4-(4-{[(2M,6M)-6-(2-chloro-4-fluorophenyl)-5-(methoxycarbonyl)-2-(pyridin-2-yl)pyrimidin-4-yl]methyl}piperazin-1-yl)-4-oxobutyl]carbamoyl}-2-{[4aP,9(9a)P]-6-(dimethylamino)-3-(dimethyliminio)-3H-xanthen-9-yl}benzoate
OpenEye OEToolkits 2.0.7 4-[[4-[4-[[6-(2-chloranyl-4-fluoranyl-phenyl)-5-methoxycarbonyl-2-pyridin-2-yl-pyrimidin-4-yl]methyl]piperazin-1-yl]-4-oxidanylidene-butyl]carbamoyl]-2-[3-(dimethylamino)-6-dimethylazaniumylidene-xanthen-9-yl]benzoate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=C(OC)c1c(nc(nc1CN1CCN(CC1)C(=O)CCCNC(=O)c1cc(C=2c3ccc(cc3OC3=CC(\C=CC=23)=[N+](/C)C)N(C)C)c(cc1)C([O-])=O)c1ccccn1)c1ccc(F)cc1Cl
InChI InChI 1.03 InChI=1S/C51H48ClFN8O7/c1-58(2)32-13-17-36-42(27-32)68-43-28-33(59(3)4)14-18-37(43)45(36)38-25-30(11-15-34(38)50(64)65)49(63)55-20-8-10-44(62)61-23-21-60(22-24-61)29-41-46(51(66)67-5)47(35-16-12-31(53)26-39(35)52)57-48(56-41)40-9-6-7-19-54-40/h6-7,9,11-19,25-28H,8,10,20-24,29H2,1-5H3,(H-,55,63,64,65)
InChIKey InChI 1.03 PZTNESDVJNEZKJ-UHFFFAOYSA-N
SMILES_CANONICAL CACTVS 3.385 COC(=O)c1c(CN2CCN(CC2)C(=O)CCCNC(=O)c3ccc(C([O-])=O)c(c3)C4=C5C=CC(C=C5Oc6cc(ccc46)N(C)C)=[N+](C)C)nc(nc1c7ccc(F)cc7Cl)c8ccccn8
SMILES CACTVS 3.385 COC(=O)c1c(CN2CCN(CC2)C(=O)CCCNC(=O)c3ccc(C([O-])=O)c(c3)C4=C5C=CC(C=C5Oc6cc(ccc46)N(C)C)=[N+](C)C)nc(nc1c7ccc(F)cc7Cl)c8ccccn8
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)[O-])C(=O)NCCCC(=O)N5CCN(CC5)Cc6c(c(nc(n6)c7ccccn7)c8ccc(cc8Cl)F)C(=O)OC
SMILES OpenEye OEToolkits 2.0.7 CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)[O-])C(=O)NCCCC(=O)N5CCN(CC5)Cc6c(c(nc(n6)c7ccccn7)c8ccc(cc8Cl)F)C(=O)OC