Structural Complex
Chemical ID: 128
IUPAC Name: SPIRO(2,4,6-TRINITROBENZENE[1,2A]-2O',3O'-METHYLENE-ADENINE-TRIPHOSPHATE
Formal Charge: 0
Type: RNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: [N+]=C1C=CC2(C=C1)O[C@H]1[C@H](n3cnc4cncnc43)OC[C@H]1O2
InChI: InChI=1S/C15H12N5O3/c16-9-1-3-15(4-2-9)22-11-6-21-14(12(11)23-15)20-8-19-10-5-17-7-18-13(10)20/h1-5,7-8,11-12,14H,6H2/q+1/t11-,12-,14-/m1/s1
InChI Key: OAYURXVSFJJODF-YRGRVCCFSA-N
Physiochemical Descriptor:
Formula: C16 H17 N8 O19 P3
Molecular weight: 718.270
Hydrogen Bond Acceptor: 24
Hydrogen Bond Donor: 6
Rotatable Bonds: 16
Heavy Atoms: 46
Systematic name
Program Version Descriptor
ACDLabs 12.01 2',3'-O-{(1R)-4-[hydroxy(oxo)-lambda~5~-azanylidene]-2,6-dinitrocyclohexa-2,5-diene-1,1-diyl}adenosine 5'-(tetrahydrogen triphosphate)
OpenEye OEToolkits 1.7.6 (3aR,4R,6R,6aR)-4-(6-aminopurin-9-yl)-3',5'-dinitro-N-oxidanyl-6-[[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxymethyl]spiro[3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxole-2,4'-cyclohexa-2,5-diene]-1'-imine oxide
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 P(=O)(O)(O)OP(=O)(O)OP(=O)(O)OCC1OC(C2C1OC3(O2)C(=C/C(C=C3[N+](=O)[O-])=[N+](/O)[O-])[N+](=O)[O-])n4cnc5c(N)ncnc45
InChI InChI 1.03 InChI=1S/C16H17N8O19P3/c17-13-10-14(19-4-18-13)21(5-20-10)15-12-11(7(39-15)3-38-45(34,35)43-46(36,37)42-44(31,32)33)40-16(41-12)8(23(27)28)1-6(22(25)26)2-9(16)24(29)30/h1-2,4-5,7,11-12,15H,3H2,(H,25,26)(H,34,35)(H,36,37)(H2,17,18,19)(H2,31,32,33)/t7-,11-,12-,15-/m1/s1
InChIKey InChI 1.03 XFMMHXLUHKBKQE-UHEGPQQHSA-N
SMILES_CANONICAL CACTVS 3.385 Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@H]4O[C]5(O[C@@H]34)C(=C[C@@](C=C5[N+]([O-])=O)=[N+](O)[O-])[N+]([O-])=O
SMILES CACTVS 3.385 Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH]4O[C]5(O[CH]34)C(=C[C](C=C5[N+]([O-])=O)=[N+](O)[O-])[N+]([O-])=O
SMILES_CANONICAL OpenEye OEToolkits 1.7.6 c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)OC5(O4)C(=CC(=[N+](O)[O-])C=C5[N+](=O)[O-])[N+](=O)[O-])N
SMILES OpenEye OEToolkits 1.7.6 c1nc(c2c(n1)n(cn2)C3C4C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)OC5(O4)C(=CC(=[N+](O)[O-])C=C5[N+](=O)[O-])[N+](=O)[O-])N
Chemical Database Mapping
Database Reference ID
DrugBank DB02524
PubChem 644358
ZINC ZINC000096900390