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Summary
Structure Feature
Experiment
Ligands & Environment
5N0F
pdb_00005n0f
10.2210/pdb5n0f/pdb
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Structure Factors
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7K2
Atom Indices
Bond Indices
Highlight Substructure
Structural Complex
Chemical ID:
7K2
IUPAC Name:
[(3S,4R,5R)-4,5-dihydroxypiperidin-3-yl]methyl 1-thio-alpha-D-mannopyranoside
Formal Charge:
0
Type:
D-saccharide
Substructure
Substruture Type:
MurckoScaffold
SMILES:
C1CC[C@@H](SC[C@@H]2CCCNC2)OC1
InChI:
InChI=1S/C11H21NOS/c1-2-7-13-11(5-1)14-9-10-4-3-6-12-8-10/h10-12H,1-9H2/t10-,11-/m1/s1
InChI Key:
JAGRCGMAWNKEJO-GHMZBOCLSA-N
Physiochemical Descriptor:
Formula:
C12 H23 N O7 S
Molecular weight:
325.379
Hydrogen Bond Acceptor:
9
Hydrogen Bond Donor:
7
Rotatable Bonds:
10
Heavy Atoms:
21
Systematic name
Program
Version
Descriptor
OpenEye OEToolkits
2.0.6
(2~{R},3~{S},4~{S},5~{S},6~{R})-2-[[(3~{S},4~{R},5~{R})-4,5-bis(oxidanyl)piperidin-3-yl]methylsulfanyl]-6-(hydroxymethy l)oxane-3,4,5-triol
Chemical Descriptors
Type
Program
Version
Descriptor
InChI
InChI
1.03
InChI=1S/C12H23NO7S/c14-3-7-9(17)10(18)11(19)12(20-7)21-4-5-1-13-2-6(15)8(5)16/h5-19H,1-4H2/t5-,6-,7-,8-,9-,10+,11+,12-/m1/s1
InChIKey
InChI
1.03
KDPQETHZRPVZAI-TYMLGRTHSA-N
SMILES_CANONICAL
CACTVS
3.385
OC[C@H]1O[C@H](SC[C@H]2CNC[C@@H](O)[C@@H]2O)[C@@H](O)[C@@H](O)[C@@H]1O
SMILES
CACTVS
3.385
OC[CH]1O[CH](SC[CH]2CNC[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O
SMILES_CANONICAL
OpenEye OEToolkits
2.0.6
C1[C@@H]([C@H]([C@@H](CN1)O)O)CS[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O
SMILES
OpenEye OEToolkits
2.0.6
C1C(C(C(CN1)O)O)CSC2C(C(C(C(O2)CO)O)O)O
Chemical Database Mapping
Database
Reference ID
PubChem
129316472
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