Structural Complex
Chemical ID: 6D6
IUPAC Name: 5'-{[(3S)-3-amino-3-carboxypropyl](3-aminopropyl)amino}-5'-deoxyadenosine
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: c1ncc2ncn([C@H]3CCCO3)c2n1
InChI: InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1
InChI Key: DAKONNSVCLKUJN-MRVPVSSYSA-N
Physiochemical Descriptor:
Formula: C17 H28 N8 O5
Molecular weight: 424.455
Hydrogen Bond Acceptor: 13
Hydrogen Bond Donor: 6
Rotatable Bonds: 15
Heavy Atoms: 30
Systematic name
Program Version Descriptor
ACDLabs 12.01 5'-{[(3S)-3-amino-3-carboxypropyl](3-aminopropyl)amino}-5'-deoxyadenosine
OpenEye OEToolkits 2.0.4 (2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]-2-azanyl-butanoic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 C(CCN(CCC(C(O)=O)N)CC1C(O)C(C(O1)n2cnc3c2ncnc3N)O)N
InChI InChI 1.03 InChI=1S/C17H28N8O5/c18-3-1-4-24(5-2-9(19)17(28)29)6-10-12(26)13(27)16(30-10)25-8-23-11-14(20)21-7-22-15(11)25/h7-10,12-13,16,26-27H,1-6,18-19H2,(H,28,29)(H2,20,21,22)/t9-,10+,12+,13+,16+/m0/s1
InChIKey InChI 1.03 NHAKJKNYYCYZBR-UOYPZJKHSA-N
SMILES_CANONICAL CACTVS 3.385 NCCCN(CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
SMILES CACTVS 3.385 NCCCN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
SMILES_CANONICAL OpenEye OEToolkits 2.0.4 c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CCCN)CC[C@@H](C(=O)O)N)O)O)N
SMILES OpenEye OEToolkits 2.0.4 c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCCN)CCC(C(=O)O)N)O)O)N
Chemical Database Mapping
Database Reference ID
ChEMBL CHEMBL3414628
PubChem 56589655
ZINC ZINC000199753701
SureChEMBL SCHEMBL19111317