Structural Complex
Chemical ID: 55T
IUPAC Name: 5'-O-[(R)-[(S)-[3-(acetylamino)phenyl](phosphono)methoxy](hydroxy)phosphoryl]cytidine
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ncccn1[C@H]1CC[C@@H](CO[PH](=O)OCc2ccccc2)O1
InChI: InChI=1S/C16H19N2O5P/c19-16-17-9-4-10-18(16)15-8-7-14(23-15)12-22-24(20)21-11-13-5-2-1-3-6-13/h1-6,9-10,14-15,24H,7-8,11-12H2/t14-,15+/m0/s1
InChI Key: HHQVWYHZIPAWSH-LSDHHAIUSA-N
Physiochemical Descriptor:
Formula: C18 H24 N4 O12 P2
Molecular weight: 550.350
Hydrogen Bond Acceptor: 15
Hydrogen Bond Donor: 7
Rotatable Bonds: 16
Heavy Atoms: 36
Systematic name
Program Version Descriptor
ACDLabs 12.01 5'-O-[(R)-[(S)-[3-(acetylamino)phenyl](phosphono)methoxy](hydroxy)phosphoryl]cytidine
OpenEye OEToolkits 1.9.2 [(S)-(3-acetamidophenyl)-[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-methyl]phosphonic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 N1(C=CC(=NC1=O)N)C2C(C(C(O2)COP(=O)(O)OC(P(O)(=O)O)c3cc(ccc3)NC(C)=O)O)O
InChI InChI 1.03 InChI=1S/C18H24N4O12P2/c1-9(23)20-11-4-2-3-10(7-11)17(35(27,28)29)34-36(30,31)32-8-12-14(24)15(25)16(33-12)22-6-5-13(19)21-18(22)26/h2-7,12,14-17,24-25H,8H2,1H3,(H,20,23)(H,30,31)(H2,19,21,26)(H2,27,28,29)/t12-,14-,15-,16-,17+/m1/s1
InChIKey InChI 1.03 DIZKZDHPUBLUSO-NHMWIVBRSA-N
SMILES_CANONICAL CACTVS 3.385 CC(=O)Nc1cccc(c1)[C@@H](O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=NC3=O)N)[P](O)(O)=O
SMILES CACTVS 3.385 CC(=O)Nc1cccc(c1)[CH](O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=NC3=O)N)[P](O)(O)=O
SMILES_CANONICAL OpenEye OEToolkits 1.9.2 CC(=O)Nc1cccc(c1)[C@@H](OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=NC3=O)N)O)O)P(=O)(O)O
SMILES OpenEye OEToolkits 1.9.2 CC(=O)Nc1cccc(c1)C(OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=NC3=O)N)O)O)P(=O)(O)O
Chemical Database Mapping
Database Reference ID
PubChem 121595964
ZINC ZINC000584905113
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