Structural Complex
Chemical ID: 3R2
IUPAC Name: 2'-deoxy-5'-O-[(R)-{[(R)-{[(1S,3R,4R,5S)-3,4-dihydroxy-5-methylcyclohexyl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-3,4-dihydrothymidine
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)O[PH](=O)OC3CCCCC3)O2)c(=O)[nH]1
InChI: InChI=1S/C15H24N2O8P2/c18-13-8-9-17(15(19)16-13)14-7-6-12(23-14)10-22-26(20)25-27(21)24-11-4-2-1-3-5-11/h8-9,11-12,14,26-27H,1-7,10H2,(H,16,18,19)/t12-,14+/m0/s1
InChI Key: CMFSTEUJCSLUCN-GXTWGEPZSA-N
Physiochemical Descriptor:
Formula: C17 H28 N2 O13 P2
Molecular weight: 530.357
Hydrogen Bond Acceptor: 14
Hydrogen Bond Donor: 6
Rotatable Bonds: 15
Heavy Atoms: 34
Systematic name
Program Version Descriptor
ACDLabs 12.01 2'-deoxy-5'-O-[(R)-{[(R)-{[(1S,3R,4R,5S)-3,4-dihydroxy-5-methylcyclohexyl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-3,4-dihydrothymidine
OpenEye OEToolkits 1.7.6 [(1S,3S,4R,5R)-3-methyl-4,5-bis(oxidanyl)cyclohexyl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=P(OC1CC(C)C(O)C(O)C1)(O)OP(=O)(O)OCC3OC(N2C(=O)NC(=O)C(=C2)C)CC3O
InChI InChI 1.03 InChI=1S/C17H28N2O13P2/c1-8-3-10(4-12(21)15(8)22)31-34(27,28)32-33(25,26)29-7-13-11(20)5-14(30-13)19-6-9(2)16(23)18-17(19)24/h6,8,10-15,20-22H,3-5,7H2,1-2H3,(H,25,26)(H,27,28)(H,18,23,24)/t8-,10-,11-,12+,13+,14+,15+/m0/s1
InChIKey InChI 1.03 CWVOKCJHBPKJQP-PVMIAKCWSA-N
SMILES_CANONICAL CACTVS 3.385 C[C@H]1C[C@@H](C[C@@H](O)[C@@H]1O)O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O
SMILES CACTVS 3.385 C[CH]1C[CH](C[CH](O)[CH]1O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O
SMILES_CANONICAL OpenEye OEToolkits 1.7.6 C[C@H]1C[C@@H](C[C@H]([C@@H]1O)O)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O
SMILES OpenEye OEToolkits 1.7.6 CC1CC(CC(C1O)O)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O
Chemical Database Mapping
Database Reference ID
PubChem 86583029
ZINC ZINC000223062284
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