Structural Complex
Chemical ID: 16B
IUPAC Name: N-hydroxycytidine 5'-(dihydrogen phosphate)
Formal Charge: 0
Type: RNA linking
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ncccn1[C@H]1CCCO1
InChI: InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1
InChI Key: AKXKPKRAUWTVBW-SSDOTTSWSA-N
Physiochemical Descriptor:
Formula: C9 H14 N3 O9 P
Molecular weight: 339.196
Hydrogen Bond Acceptor: 12
Hydrogen Bond Donor: 6
Rotatable Bonds: 10
Heavy Atoms: 22
Systematic name
Program Version Descriptor
ACDLabs 12.01 N-hydroxycytidine 5'-(dihydrogen phosphate)
OpenEye OEToolkits 2.0.7 [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-[4-(oxidanylamino)-2-oxidanylidene-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=P(O)(O)OCC1OC(N2C=CC(=NC2=O)NO)C(O)C1O
InChI InChI 1.03 InChI=1S/C9H14N3O9P/c13-6-4(3-20-22(17,18)19)21-8(7(6)14)12-2-1-5(11-16)10-9(12)15/h1-2,4,6-8,13-14,16H,3H2,(H,10,11,15)(H2,17,18,19)/t4-,6-,7-,8-/m1/s1
InChIKey InChI 1.03 DYOUVDKCXLKHKY-XVFCMESISA-N
SMILES_CANONICAL CACTVS 3.385 ONC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES CACTVS 3.385 ONC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 C1=CN(C(=O)N=C1NO)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
SMILES OpenEye OEToolkits 2.0.7 C1=CN(C(=O)N=C1NO)C2C(C(C(O2)COP(=O)(O)O)O)O
Chemical Database Mapping
Database Reference ID
ChEMBL CHEMBL2221214
PubChem 21089