Structural Complex
Chemical ID: 0L6
IUPAC Name: 5-(5-aminopent-1-yn-1-yl)-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1NC=CCN1[C@H]1CCCO1
InChI: InChI=1S/C8H12N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4,7H,1,3,5-6H2,(H,9,11)/t7-/m1/s1
InChI Key: HYYMJBYLBZNPDE-SSDOTTSWSA-N
Physiochemical Descriptor:
Formula: C14 H25 N4 O13 P3
Molecular weight: 550.289
Hydrogen Bond Acceptor: 15
Hydrogen Bond Donor: 8
Rotatable Bonds: 17
Heavy Atoms: 34
Systematic name
Program Version Descriptor
ACDLabs 12.01 5-(5-aminopent-1-yn-1-yl)-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)
OpenEye OEToolkits 1.7.6 [[(2R,3S,5R)-5-[6-azanyl-5-(5-azanylpent-1-ynyl)-2-oxidanylidene-1,4-dihydropyrimidin-3-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=C(C#CCCCN)C1)N)CC2O
InChI InChI 1.03 InChI=1S/C14H25N4O13P3/c15-5-3-1-2-4-9-7-18(14(20)17-13(9)16)12-6-10(19)11(29-12)8-28-33(24,25)31-34(26,27)30-32(21,22)23/h10-12,19H,1,3,5-8,15-16H2,(H,17,20)(H,24,25)(H,26,27)(H2,21,22,23)/t10-,11+,12+/m0/s1
InChIKey InChI 1.03 QDKMIMUSGQEUSC-QJPTWQEYSA-N
SMILES_CANONICAL CACTVS 3.370 NCCCC#CC1=C(N)NC(=O)N(C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2
SMILES CACTVS 3.370 NCCCC#CC1=C(N)NC(=O)N(C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2
SMILES_CANONICAL OpenEye OEToolkits 1.7.6 C1[C@@H]([C@H](O[C@H]1N2CC(=C(NC2=O)N)C#CCCCN)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
SMILES OpenEye OEToolkits 1.7.6 C1C(C(OC1N2CC(=C(NC2=O)N)C#CCCCN)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
Chemical Database Mapping
Database Reference ID
PubChem 137347869
ZINC ZINC000098207826