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Summary
Structure Feature
Experiment
Ligands & Environment
3U40
pdb_00003u40
10.2210/pdb3u40/pdb
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FASTA
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Binary MMCIF
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Structure Factors
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Validation File (XML)
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ADN
NO3
PO4
Atom Indices
Bond Indices
Highlight Substructure
Structural Complex
Chemical ID:
ADN
IUPAC Name:
ADENOSINE
Formal Charge:
0
Type:
NON-POLYMER
Substructure
Substruture Type:
MurckoScaffold
SMILES:
c1ncc2ncn([C@H]3CCCO3)c2n1
InChI:
InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1
InChI Key:
DAKONNSVCLKUJN-MRVPVSSYSA-N
Physiochemical Descriptor:
Formula:
C10 H13 N5 O4
Molecular weight:
267.241
Hydrogen Bond Acceptor:
9
Hydrogen Bond Donor:
4
Rotatable Bonds:
6
Heavy Atoms:
19
Systematic name
Program
Version
Descriptor
ACDLabs
10.04
adenosine
OpenEye OEToolkits
1.5.0
(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol
Chemical Descriptors
Type
Program
Version
Descriptor
SMILES
ACDLabs
10.04
n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CO)N
SMILES_CANONICAL
CACTVS
3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O
SMILES
CACTVS
3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O
SMILES_CANONICAL
OpenEye OEToolkits
1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N
SMILES
OpenEye OEToolkits
1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CO)O)O)N
InChI
InChI
1.03
InChI=1S/C10H13N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,6-7,10,16-18H,1H2,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1
InChIKey
InChI
1.03
OIRDTQYFTABQOQ-KQYNXXCUSA-N
Chemical Database Mapping
Database
Reference ID
DrugBank
DB00640
ChEMBL
CHEMBL477
PubChem
60961
ChEBI
16335
ZINC
ZINC000002169830
SureChEMBL
SCHEMBL731
HMDB
HMDB0000050
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