Structural Complex
Chemical ID: 5BT
IUPAC Name: 5-bromo-2'-deoxycytidine
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ncccn1[C@H]1CCCO1
InChI: InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1
InChI Key: AKXKPKRAUWTVBW-SSDOTTSWSA-N
Physiochemical Descriptor:
Formula: C9 H12 Br N3 O4
Molecular weight: 306.113
Hydrogen Bond Acceptor: 7
Hydrogen Bond Donor: 3
Rotatable Bonds: 5
Heavy Atoms: 17
Systematic name
Program Version Descriptor
ACDLabs 12.01 5-bromo-2'-deoxycytidine
OpenEye OEToolkits 1.7.0 4-azanyl-5-bromo-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 BrC=1C(=NC(=O)N(C=1)C2OC(C(O)C2)CO)N
SMILES_CANONICAL CACTVS 3.370 NC1=NC(=O)N(C=C1Br)[C@H]2C[C@H](O)[C@@H](CO)O2
SMILES CACTVS 3.370 NC1=NC(=O)N(C=C1Br)[CH]2C[CH](O)[CH](CO)O2
SMILES_CANONICAL OpenEye OEToolkits 1.7.0 C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)Br)CO)O
SMILES OpenEye OEToolkits 1.7.0 C1C(C(OC1N2C=C(C(=NC2=O)N)Br)CO)O
InChI InChI 1.03 InChI=1S/C9H12BrN3O4/c10-4-2-13(9(16)12-8(4)11)7-1-5(15)6(3-14)17-7/h2,5-7,14-15H,1,3H2,(H2,11,12,16)/t5-,6+,7+/m0/s1
InChIKey InChI 1.03 KISUPFXQEHWGAR-RRKCRQDMSA-N
Chemical Database Mapping
Database Reference ID
ChEMBL CHEMBL386413
PubChem 472175
ZINC ZINC000017322984
SureChEMBL SCHEMBL197813