Structural Complex
Chemical ID: DYN
IUPAC Name: 5'-O-[(S)-{[(3R,4R)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[(S)-hydroxy(3-hydroxypropoxy)phosphoryl]oxy}methyl)pyrrolidin-3-yl]oxy}(hydroxy)phosphoryl]-3'-O-[(R)-hydroxy(4-hydroxybutoxy)phosphoryl]-2'-O-methylguanosine
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]cnc2c1ncn2[C@H]1CC[C@@H](CO[PH](=O)O[C@@H]2CCN(Cc3c[nH]c4cncnc34)C2)O1
InChI: InChI=1S/C21H25N8O5P/c30-21-19-20(25-11-26-21)29(12-27-19)17-2-1-15(33-17)9-32-35(31)34-14-3-4-28(8-14)7-13-5-23-16-6-22-10-24-18(13)16/h5-6,10-12,14-15,17,23,35H,1-4,7-9H2,(H,25,26,30)/t14-,15+,17-/m1/s1
InChI Key: WCWMRUGYRYILAM-HLLBOEOZSA-N
Physiochemical Descriptor:
Formula: C30 H47 N10 O17 P3
Molecular weight: 912.672
Hydrogen Bond Acceptor: 25
Hydrogen Bond Donor: 9
Rotatable Bonds: 31
Heavy Atoms: 60
Systematic name
Program Version Descriptor
ACDLabs 11.02 5'-O-[(S)-{[(3R,4R)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[(S)-hydroxy(3-hydroxypropoxy)phosphoryl]oxy}methyl)pyrrolidin-3-yl]oxy}(hydroxy)phosphoryl]-3'-O-[(R)-hydroxy(4-hydroxybutoxy)phosphoryl]-2'-O-methylguanosine
OpenEye OEToolkits 1.6.1 [(2R,3R,4R,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-2-[[[(1S,3R,4R)-1-[(4-azanyl-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[[hydroxy(3-hydroxypropoxy)phosphoryl]oxymethyl]pyrrolidin-3-yl]oxy-hydroxy-phosphoryl]oxymethyl]-4-methoxy-oxolan-3-yl] 4-hydroxybutyl hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 11.02 O=P(OCCCO)(O)OCC6CN(Cc2c1ncnc(N)c1nc2)CC6OP(=O)(O)OCC5OC(n4cnc3c4N=C(N)NC3=O)C(OC)C5OP(=O)(OCCCCO)O
SMILES_CANONICAL CACTVS 3.352 CO[C@@H]1[C@H](O[P](O)(=O)OCCCCO)[C@@H](CO[P](O)(=O)O[C@H]2CN(C[C@@H]2CO[P](O)(=O)OCCCO)Cc3c[nH]c4c(N)ncnc34)O[C@H]1n5cnc6C(=O)NC(=Nc56)N
SMILES CACTVS 3.352 CO[CH]1[CH](O[P](O)(=O)OCCCCO)[CH](CO[P](O)(=O)O[CH]2CN(C[CH]2CO[P](O)(=O)OCCCO)Cc3c[nH]c4c(N)ncnc34)O[CH]1n5cnc6C(=O)NC(=Nc56)N
SMILES_CANONICAL OpenEye OEToolkits 1.7.0 CO[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2N=C(NC3=O)N)CO[P@](=O)(O)O[C@H]4C[N@@](C[C@@H]4CO[P@@](=O)(O)OCCCO)Cc5c[nH]c6c5ncnc6N)O[P@](=O)(O)OCCCCO
SMILES OpenEye OEToolkits 1.7.0 COC1C(C(OC1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)OC4CN(CC4COP(=O)(O)OCCCO)Cc5c[nH]c6c5ncnc6N)OP(=O)(O)OCCCCO
InChI InChI 1.03 InChI=1S/C30H47N10O17P3/c1-50-25-24(57-59(46,47)52-7-3-2-5-41)20(55-29(25)40-16-36-23-27(40)37-30(32)38-28(23)43)14-54-60(48,49)56-19-12-39(10-17-9-33-22-21(17)34-15-35-26(22)31)11-18(19)13-53-58(44,45)51-8-4-6-42/h9,15-16,18-20,24-25,29,33,41-42H,2-8,10-14H2,1H3,(H,44,45)(H,46,47)(H,48,49)(H2,31,34,35)(H3,32,37,38,43)/t18-,19+,20-,24-,25-,29-/m1/s1
InChIKey InChI 1.03 QYBAOMLZOZKJGY-BLRDUOQJSA-N
Chemical Database Mapping
Database Reference ID
PubChem 135566476
ZINC ZINC000198010166
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