Structural Complex
Chemical ID: 2OM
IUPAC Name: 5,6-dihydroorotidine 5'-monophosphate
Formal Charge: 0
Type: RNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1CCN([C@H]2CCCO2)C(=O)N1
InChI: InChI=1S/C8H12N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h7H,1-5H2,(H,9,11,12)/t7-/m1/s1
InChI Key: ZAERJFADDUTCMT-SSDOTTSWSA-N
Physiochemical Descriptor:
Formula: C10 H15 N2 O11 P
Molecular weight: 370.207
Hydrogen Bond Acceptor: 11
Hydrogen Bond Donor: 6
Rotatable Bonds: 9
Heavy Atoms: 24
Systematic name
Program Version Descriptor
ACDLabs 10.04 6-carboxyuridine 5'-(dihydrogen phosphate)
OpenEye OEToolkits 1.5.0 (4R)-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2,6-dioxo-1,3-diazinane-4-carboxylic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C(O)C1N(C(=O)NC(=O)C1)C2OC(C(O)C2O)COP(=O)(O)O
SMILES_CANONICAL CACTVS 3.341 O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2[C@H](CC(=O)NC2=O)C(O)=O
SMILES CACTVS 3.341 O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2[CH](CC(=O)NC2=O)C(O)=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 C1[C@@H](N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C(=O)O
SMILES OpenEye OEToolkits 1.5.0 C1C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)C(=O)O
InChI InChI 1.03 InChI=1S/C10H15N2O11P/c13-5-1-3(9(16)17)12(10(18)11-5)8-7(15)6(14)4(23-8)2-22-24(19,20)21/h3-4,6-8,14-15H,1-2H2,(H,16,17)(H,11,13,18)(H2,19,20,21)/t3-,4-,6-,7-,8-/m1/s1
InChIKey InChI 1.03 ZVESSEXVBFSYOC-NFTAXOAUSA-N
Chemical Database Mapping
Database Reference ID
PubChem 42615258
ZINC ZINC000058633028