ISDA: 3BYO

Atom Indices

Bond Indices

Highlight Substructure

Structural Complex

Chemical ID: AM9

IUPAC Name: 6-(2,6-dimethylphenyl)-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimido[5',4':5,6]pyrimido[1,2-a]benzimidazol-5(6H)-one

Formal Charge: 0

Type: NON-POLYMER

Substructure

Substruture Type: MurckoScaffold

SMILES: O=c1c2cnc(Nc3ccc(N4CCNCC4)cc3)nc2n2c3ccccc3nc2n1-c1ccccc1

InChI: InChI=1S/C28H24N8O/c37-26-22-18-30-27(31-19-10-12-20(13-11-19)34-16-14-29-15-17-34)33-25(22)36-24-9-5-4-8-23(24)32-28(36)35(26)21-6-2-1-3-7-21/h1-13,18,29H,14-17H2,(H,30,31,33)

InChI Key: ZYMYNSPBQKPZGY-UHFFFAOYSA-N

Physiochemical Descriptor:

Formula: C31 H30 N8 O

Molecular weight: 530.623

Hydrogen Bond Acceptor: 9

Hydrogen Bond Donor: 1

Rotatable Bonds: 7

Heavy Atoms: 40

Systematic name

Program	Version	Descriptor
ACDLabs	10.04	6-(2,6-dimethylphenyl)-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimido[5',4':5,6]pyrimido[1,2-a]benzimidazol-5(6H)-one

Chemical Descriptors

Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	O=C3N(c1c(cccc1C)C)c6nc7ccccc7n6c2nc(ncc23)Nc4ccc(cc4)N5CCN(C)CC5
SMILES_CANONICAL	CACTVS	3.341	CN1CCN(CC1)c2ccc(Nc3ncc4C(=O)N(c5nc6ccccc6n5c4n3)c7c(C)cccc7C)cc2
SMILES	CACTVS	3.341	CN1CCN(CC1)c2ccc(Nc3ncc4C(=O)N(c5nc6ccccc6n5c4n3)c7c(C)cccc7C)cc2
SMILES_CANONICAL	OpenEye OEToolkits	1.5.0	Cc1cccc(c1N2c3nc4ccccc4n3-c5c(cnc(n5)Nc6ccc(cc6)N7CCN(CC7)C)C2=O)C
SMILES	OpenEye OEToolkits	1.5.0	Cc1cccc(c1N2c3nc4ccccc4n3-c5c(cnc(n5)Nc6ccc(cc6)N7CCN(CC7)C)C2=O)C
InChI	InChI	1.03	InChI=1S/C31H30N8O/c1-20-7-6-8-21(2)27(20)39-29(40)24-19-32-30(35-28(24)38-26-10-5-4-9-25(26)34-31(38)39)33-22-11-13-23(14-12-22)37-17-15-36(3)16-18-37/h4-14,19H,15-18H2,1-3H3,(H,32,33,35)
InChIKey	InChI	1.03	BHJJWVDKNXABFS-UHFFFAOYSA-N

Chemical Database Mapping

Database	Reference ID
ChEMBL	CHEMBL410295
PubChem	11785878
ZINC	ZINC000053214756
SureChEMBL	SCHEMBL5235694

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