Structural Complex
Chemical ID: 8GD
IUPAC Name: 2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate)
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]cnc2c1[nH]c(=O)n2[C@H]1CCCO1
InChI: InChI=1S/C9H10N4O3/c14-8-6-7(10-4-11-8)13(9(15)12-6)5-2-1-3-16-5/h4-5H,1-3H2,(H,12,15)(H,10,11,14)/t5-/m1/s1
InChI Key: OCGHRGCNCAPGDV-RXMQYKEDSA-N
Physiochemical Descriptor:
Formula: C10 H15 N5 O11 P2
Molecular weight: 443.201
Hydrogen Bond Acceptor: 14
Hydrogen Bond Donor: 7
Rotatable Bonds: 11
Heavy Atoms: 28
Systematic name
Program Version Descriptor
OpenEye OEToolkits 1.6.1 [(2R,3S,5R)-5-(2-azanyl-6,8-dioxo-1,7-dihydropurin-9-yl)-3-hydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES_CANONICAL CACTVS 3.352 NC1=NC2=C(NC(=O)N2[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(O)=O)O3)C(=O)N1
SMILES CACTVS 3.352 NC1=NC2=C(NC(=O)N2[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O3)C(=O)N1
SMILES_CANONICAL OpenEye OEToolkits 1.7.0 C1[C@@H]([C@H](O[C@H]1N2C3=C(C(=O)NC(=N3)N)NC2=O)CO[P@](=O)(O)OP(=O)(O)O)O
SMILES OpenEye OEToolkits 1.7.0 C1C(C(OC1N2C3=C(C(=O)NC(=N3)N)NC2=O)COP(=O)(O)OP(=O)(O)O)O
InChI InChI 1.03 InChI=1S/C10H15N5O11P2/c11-9-13-7-6(8(17)14-9)12-10(18)15(7)5-1-3(16)4(25-5)2-24-28(22,23)26-27(19,20)21/h3-5,16H,1-2H2,(H,12,18)(H,22,23)(H2,19,20,21)(H3,11,13,14,17)/t3-,4+,5+/m0/s1
InChIKey InChI 1.03 LJMLTZSNWOCYNQ-VPENINKCSA-N
Chemical Database Mapping
Database Reference ID
PubChem 135566401
ChEBI 63728
ZINC ZINC000058638349
HMDB HMDB0059648