Structural Complex
Chemical ID: ZKD
IUPAC Name: URIDINE-DIPHOSPHATE-1-DEOXY-1-THIO-N-ACETYLGLUCOSAMINE
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)O[PH](=O)S[C@@H]3CCCCO3)O2)c(=O)[nH]1
InChI: InChI=1S/C14H22N2O8P2S/c17-11-6-7-16(14(18)15-11)12-5-4-10(23-12)9-22-25(19)24-26(20)27-13-3-1-2-8-21-13/h6-7,10,12-13,25-26H,1-5,8-9H2,(H,15,17,18)/t10-,12+,13+/m0/s1
InChI Key: DLOARBBQQJXLRY-CYZMBNFOSA-N
Physiochemical Descriptor:
Formula: C17 H27 N3 O16 P2 S
Molecular weight: 623.419
Hydrogen Bond Acceptor: 18
Hydrogen Bond Donor: 9
Rotatable Bonds: 18
Heavy Atoms: 39
Systematic name
Program Version Descriptor
ACDLabs 10.04 S-[(2R,3S,4R,5S,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl] O-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl} dihydrogen thiodiphosphate (non-preferred name)
OpenEye OEToolkits 1.6.1 [(2R,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl-[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-phosphinic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=P(SC1OC(C(O)C(O)C1NC(=O)C)CO)(O)OP(=O)(O)OCC3OC(N2C=CC(=O)NC2=O)C(O)C3O
SMILES_CANONICAL CACTVS 3.352 CC(=O)N[C@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1S[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O
SMILES CACTVS 3.352 CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1S[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O
SMILES_CANONICAL OpenEye OEToolkits 1.6.1 CC(=O)NC1[C@H]([C@@H]([C@H](O[C@@H]1S[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)CO)O)O
SMILES OpenEye OEToolkits 1.6.1 CC(=O)NC1C(C(C(OC1SP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)CO)O)O
InChI InChI 1.03 InChI=1S/C17H27N3O16P2S/c1-6(22)18-10-13(26)11(24)7(4-21)35-16(10)39-38(31,32)36-37(29,30)33-5-8-12(25)14(27)15(34-8)20-3-2-9(23)19-17(20)28/h2-3,7-8,10-16,21,24-27H,4-5H2,1H3,(H,18,22)(H,29,30)(H,31,32)(H,19,23,28)/t7-,8-,10+,11-,12-,13-,14-,15-,16-/m1/s1
InChIKey InChI 1.03 NBABRWVWQSKDQY-ZYQOOJPVSA-N
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