Structural Complex
Chemical ID: 1AA
IUPAC Name: 5'-O-[({[(2-{[(2-AMINOPHENYL)CARBONYL]OXY}ETHYL)OXY]PHOSPHINATO}OXY)PHOSPHINATO]CYTIDINE
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C(OCCO[PH](=O)O[PH](=O)OC[C@@H]1CC[C@H](n2cccnc2=O)O1)c1ccccc1
InChI: InChI=1S/C18H22N2O9P2/c21-17(14-5-2-1-3-6-14)25-11-12-26-30(23)29-31(24)27-13-15-7-8-16(28-15)20-10-4-9-19-18(20)22/h1-6,9-10,15-16,30-31H,7-8,11-13H2/t15-,16+/m0/s1
InChI Key: DYMFCCYFKLHREJ-JKSUJKDBSA-N
Physiochemical Descriptor:
Formula: C18 H24 N4 O13 P2
Molecular weight: 566.350
Hydrogen Bond Acceptor: 17
Hydrogen Bond Donor: 6
Rotatable Bonds: 17
Heavy Atoms: 37
Systematic name
Program Version Descriptor
ACDLabs 10.04 5'-O-[(S)-{[(R)-(2-{[(2-aminophenyl)carbonyl]oxy}ethoxy)(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine
OpenEye OEToolkits 1.5.0 2-[[[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxyethyl 2-aminobenzoate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=P(O)(OCCOC(=O)c1ccccc1N)OP(=O)(O)OCC3OC(N2C(=O)N=C(N)C=C2)C(O)C3O
SMILES_CANONICAL CACTVS 3.341 NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)OCCOC(=O)c3ccccc3N)[C@@H](O)[C@H]2O
SMILES CACTVS 3.341 NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OCCOC(=O)c3ccccc3N)[CH](O)[CH]2O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 c1ccc(c(c1)C(=O)OCCO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=NC3=O)N)O)O)N
SMILES OpenEye OEToolkits 1.5.0 c1ccc(c(c1)C(=O)OCCOP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=NC3=O)N)O)O)N
InChI InChI 1.03 InChI=1S/C18H24N4O13P2/c19-11-4-2-1-3-10(11)17(25)31-7-8-32-36(27,28)35-37(29,30)33-9-12-14(23)15(24)16(34-12)22-6-5-13(20)21-18(22)26/h1-6,12,14-16,23-24H,7-9,19H2,(H,27,28)(H,29,30)(H2,20,21,26)/t12-,14-,15-,16-/m1/s1
InChIKey InChI 1.03 PGXVRIOOHRVKLC-DTZQCDIJSA-N
Chemical Database Mapping
Database Reference ID
PubChem 6102718
ZINC ZINC000058660733