Structural Complex
Chemical ID: PRD_000011
IUPAC Name: N8-Actinomycin D
Formal Charge: ?
Type: peptide-like
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1CNC(=O)[C@@H]2CCCN2C(=O)CNC(=O)[C@@H](NC(=O)c2cc(=O)cc3oc4ccnc(C(=O)N[C@H]5COC(=O)CNC(=O)CNC(=O)[C@@H]6CCCN6C(=O)CNC5=O)c4nc2-3)COC(=O)CN1
InChI: InChI=1S/C41H44N12O16/c54-19-9-20(36(61)49-21-17-67-31(59)15-43-27(55)11-45-39(64)23-3-1-7-52(23)29(57)13-47-37(21)62)33-26(10-19)69-25-5-6-42-35(34(25)51-33)41(66)50-22-18-68-32(60)16-44-28(56)12-46-40(65)24-4-2-8-53(24)30(58)14-48-38(22)63/h5-6,9-10,21-24H,1-4,7-8,11-18H2,(H,43,55)(H,44,56)(H,45,64)(H,46,65)(H,47,62)(H,48,63)(H,49,61)(H,50,66)/t21-,22-,23-,24-/m0/s1
InChI Key: HDXWJUHGNFWLDE-ZJZGAYNASA-N
Physiochemical Descriptor:
Formula: C61 H85 N13 O16
Molecular weight: 1256.405
Hydrogen Bond Acceptor: 19
Hydrogen Bond Donor: 5
Rotatable Bonds: 25
Heavy Atoms: 90
Systematic name
Program Version Descriptor
ACDLabs 12.01 8-amino-4,6-dimethyl-7-oxo-N~9~-[(6R,9R,10S,13R,18aR)-2,5,9-trimethyl-1,4,7,11,14-pentaoxo-6,13-di(propan-2-yl)hexadecahydro-1H-pyrrolo[2,1-i][1,4,7,10,13]oxatetraazacyclohexadecin-10-yl]-N~1~-[(6R,9R,10S,13S,18aR)-2,5,9-trimethyl-1,4,7,11,14-pentaoxo-6,13-di(propan-2-yl)hexadecahydro-1H-pyrrolo[2,1-i][1,4,7,10,13]oxatetraazacyclohexadecin-10-yl]-7H-pyrido[4,3-b][1,4]benzoxazine-1,9-dicarboxamide
OpenEye OEToolkits 1.7.6 8-azanyl-4,6-dimethyl-7-oxidanylidene-N1,N9-bis[(3R,6S,7R,10S,16S)-7,11,14-trimethyl-2,5,9,12,15-pentakis(oxidanylidene)-3,10-di(propan-2-yl)-8-oxa-1,4,11,14-tetrazabicyclo[14.3.0]nonadecan-6-yl]pyrido[4,3-b][1,4]benzoxazine-1,9-dicarboxamide
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=C2N1CCCC1C(=O)N(C)CC(=O)N(C)C(C(=O)OC(C)C(C(=O)NC2C(C)C)NC(=O)c4ncc(c3OC5=C(C(=O)C(N)=C(C5=Nc34)C(=O)NC7C(=O)NC(C(=O)N6CCCC6C(=O)N(C)CC(=O)N(C)C(C(=O)OC7C)C(C)C)C(C)C)C)C)C(C)C
InChI InChI 1.03 InChI=1S/C61H85N13O16/c1-26(2)40-58(84)73-21-17-19-34(73)56(82)69(13)24-36(75)71(15)47(28(5)6)60(86)88-32(11)42(53(79)65-40)67-52(78)38-39(62)49(77)31(10)51-44(38)64-45-46(63-23-30(9)50(45)90-51)55(81)68-43-33(12)89-61(87)48(29(7)8)72(16)37(76)25-70(14)57(83)35-20-18-22-74(35)59(85)41(27(3)4)66-54(43)80/h23,26-29,32-35,40-43,47-48H,17-22,24-25,62H2,1-16H3,(H,65,79)(H,66,80)(H,67,78)(H,68,81)/t32-,33-,34-,35-,40-,41+,42+,43+,47-,48-/m1/s1
InChIKey InChI 1.03 DVAQENANCBGZCP-QPIXHXGJSA-N
SMILES_CANONICAL CACTVS 3.370 CC(C)[C@@H]1NC(=O)[C@@H](NC(=O)c2ncc(C)c3OC4=C(C)C(=O)C(=C(C(=O)N[C@H]5[C@@H](C)OC(=O)[C@@H](C(C)C)N(C)C(=O)CN(C)C(=O)[C@H]6CCCN6C(=O)[C@H](NC5=O)C(C)C)C4=Nc23)N)[C@@H](C)OC(=O)[C@@H](C(C)C)N(C)C(=O)CN(C)C(=O)[C@H]7CCCN7C1=O
SMILES CACTVS 3.370 CC(C)[CH]1NC(=O)[CH](NC(=O)c2ncc(C)c3OC4=C(C)C(=O)C(=C(C(=O)N[CH]5[CH](C)OC(=O)[CH](C(C)C)N(C)C(=O)CN(C)C(=O)[CH]6CCCN6C(=O)[CH](NC5=O)C(C)C)C4=Nc23)N)[CH](C)OC(=O)[CH](C(C)C)N(C)C(=O)CN(C)C(=O)[CH]7CCCN7C1=O
SMILES_CANONICAL OpenEye OEToolkits 1.7.6 Cc1cnc(c2c1OC3=C(C(=O)C(=C(C3=N2)C(=O)N[C@H]4[C@H](OC(=O)[C@@H](N(C(=O)CN(C(=O)[C@@H]5CCCN5C(=O)[C@H](NC4=O)C(C)C)C)C)C(C)C)C)N)C)C(=O)N[C@H]6[C@H](OC(=O)[C@@H](N(C(=O)CN(C(=O)[C@@H]7CCCN7C(=O)[C@H](NC6=O)C(C)C)C)C)C(C)C)C
SMILES OpenEye OEToolkits 1.7.6 Cc1cnc(c2c1OC3=C(C(=O)C(=C(C3=N2)C(=O)NC4C(OC(=O)C(N(C(=O)CN(C(=O)C5CCCN5C(=O)C(NC4=O)C(C)C)C)C)C(C)C)C)N)C)C(=O)NC6C(OC(=O)C(N(C(=O)CN(C(=O)C7CCCN7C(=O)C(NC6=O)C(C)C)C)C)C(C)C)C
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