Structural Complex
Chemical ID: DPB
IUPAC Name: (S)-1-[2'-DEOXY-3',5'-O-(1-PHOSPHONO)BENZYLIDENE-B-D-THREO-PENTOFURANOSYL]THYMINE
Formal Charge: 0
Type: DNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@@H]2C[C@@H]3OC(c4ccccc4)OC[C@@H]3O2)c(=O)[nH]1
InChI: InChI=1S/C16H16N2O5/c19-13-6-7-18(16(20)17-13)14-8-11-12(22-14)9-21-15(23-11)10-4-2-1-3-5-10/h1-7,11-12,14-15H,8-9H2,(H,17,19,20)/t11-,12-,14-,15+/m0/s1
InChI Key: DPMDRGKDJLBCRC-NZBPQXDJSA-N
Physiochemical Descriptor:
Formula: C17 H19 N2 O8 P
Molecular weight: 410.315
Hydrogen Bond Acceptor: 9
Hydrogen Bond Donor: 3
Rotatable Bonds: 6
Heavy Atoms: 28
Systematic name
Program Version Descriptor
ACDLabs 10.04 1-{2-deoxy-3,5-O-[phenyl(phosphono)methylidene]-beta-L-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione
OpenEye OEToolkits 1.5.0 [(2S,4aS,6S,7aS)-6-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-2-phenyl-4a,6,7,7a-tetrahydro-4H-furo[3,2-d][1,3]dioxin-2-yl]phosphonic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C1C(=CN(C(=O)N1)C4OC2C(OC(OC2)(c3ccccc3)P(=O)(O)O)C4)C
SMILES_CANONICAL CACTVS 3.341 CC1=CN([C@@H]2C[C@@H]3O[C@@](OC[C@@H]3O2)(c4ccccc4)[P](O)(O)=O)C(=O)NC1=O
SMILES CACTVS 3.341 CC1=CN([CH]2C[CH]3O[C](OC[CH]3O2)(c4ccccc4)[P](O)(O)=O)C(=O)NC1=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 CC1=CN(C(=O)NC1=O)[C@@H]2C[C@H]3[C@@H](O2)CO[C@](O3)(c4ccccc4)P(=O)(O)O
SMILES OpenEye OEToolkits 1.5.0 CC1=CN(C(=O)NC1=O)C2CC3C(O2)COC(O3)(c4ccccc4)P(=O)(O)O
InChI InChI 1.03 InChI=1S/C17H19N2O8P/c1-10-8-19(16(21)18-15(10)20)14-7-12-13(26-14)9-25-17(27-12,28(22,23)24)11-5-3-2-4-6-11/h2-6,8,12-14H,7,9H2,1H3,(H,18,20,21)(H2,22,23,24)/t12-,13-,14-,17-/m0/s1
InChIKey InChI 1.03 WTZFKHNHHRPQOU-WSMBLCCSSA-N
Chemical Database Mapping
Database Reference ID
DrugBank DB02217
PubChem 5288101
ZINC ZINC000012501733