Structural Complex
Chemical ID: DBM
IUPAC Name: 9-(6-DEOXY-BETA-D-ALLOFURANOSYL)-6-METHYLPURINE
Formal Charge: 0
Type: RNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: c1ncc2ncn([C@H]3CCCO3)c2n1
InChI: InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1
InChI Key: DAKONNSVCLKUJN-MRVPVSSYSA-N
Physiochemical Descriptor:
Formula: C12 H16 N4 O4
Molecular weight: 280.280
Hydrogen Bond Acceptor: 8
Hydrogen Bond Donor: 3
Rotatable Bonds: 7
Heavy Atoms: 20
Systematic name
Program Version Descriptor
ACDLabs 10.04 9-(6-deoxy-beta-D-allofuranosyl)-6-methyl-9H-purine
OpenEye OEToolkits 1.5.0 (2R,3S,4R,5R)-2-(1-hydroxyethyl)-5-(6-methylpurin-9-yl)oxolane-3,4-diol
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 n2c1c(ncnc1n(c2)C3OC(C(O)C3O)C(O)C)C
SMILES_CANONICAL CACTVS 3.341 C[C@@H](O)[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(C)ncnc23
SMILES CACTVS 3.341 C[CH](O)[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(C)ncnc23
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 Cc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)[C@@H](C)O)O)O
SMILES OpenEye OEToolkits 1.5.0 Cc1c2c(ncn1)n(cn2)C3C(C(C(O3)C(C)O)O)O
InChI InChI 1.03 InChI=1S/C12H16N4O4/c1-5-7-11(14-3-13-5)16(4-15-7)12-9(19)8(18)10(20-12)6(2)17/h3-4,6,8-10,12,17-19H,1-2H3/t6-,8+,9-,10-,12-/m1/s1
InChIKey InChI 1.03 XJZDIUOABWMPLZ-FHQKJXBVSA-N
Chemical Database Mapping
Database Reference ID
DrugBank DB03952
PubChem 447724
ZINC ZINC000006521062
SureChEMBL SCHEMBL4313920