Structural Complex
Chemical ID: 5MD
IUPAC Name: 2'-deoxy-1-methyl-pseudouridine
Formal Charge: 0
Type: DNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]cc([C@H]2CCCO2)c(=O)[nH]1
InChI: InChI=1S/C8H10N2O3/c11-7-5(4-9-8(12)10-7)6-2-1-3-13-6/h4,6H,1-3H2,(H2,9,10,11,12)/t6-/m1/s1
InChI Key: YRMMFKUTSWTZND-ZCFIWIBFSA-N
Physiochemical Descriptor:
Formula: C10 H14 N2 O5
Molecular weight: 242.229
Hydrogen Bond Acceptor: 6
Hydrogen Bond Donor: 3
Rotatable Bonds: 5
Heavy Atoms: 17
Systematic name
Program Version Descriptor
ACDLabs 10.04 (1R)-1,4-anhydro-2-deoxy-1-(1-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-D-erythro-pentitol
OpenEye OEToolkits 1.5.0 5-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-1-methyl-pyrimidine-2,4-dione
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C1N(C=C(C(=O)N1)C2OC(CO)C(O)C2)C
SMILES_CANONICAL CACTVS 3.341 CN1C=C([C@H]2C[C@H](O)[C@@H](CO)O2)C(=O)NC1=O
SMILES CACTVS 3.341 CN1C=C([CH]2C[CH](O)[CH](CO)O2)C(=O)NC1=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 CN1C=C(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O
SMILES OpenEye OEToolkits 1.5.0 CN1C=C(C(=O)NC1=O)C2CC(C(O2)CO)O
InChI InChI 1.03 InChI=1S/C10H14N2O5/c1-12-3-5(9(15)11-10(12)16)7-2-6(14)8(4-13)17-7/h3,6-8,13-14H,2,4H2,1H3,(H,11,15,16)/t6-,7+,8+/m0/s1
InChIKey InChI 1.03 AMDJRICBYOAHBZ-XLPZGREQSA-N
Chemical Database Mapping
Database Reference ID
DrugBank DB03763
PubChem 445537
SureChEMBL SCHEMBL5991319