Structural Complex
Chemical ID: D4D
IUPAC Name: 2',3'-DEHYDRO-2',3'-DEOXY-THYMIDINE 5'-DIPHOSPHATE
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2C=CCO2)c(=O)[nH]1
InChI: InChI=1S/C8H8N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h1-4,7H,5H2,(H,9,11,12)/t7-/m1/s1
InChI Key: CEVRKBKMYPQPHZ-SSDOTTSWSA-N
Physiochemical Descriptor:
Formula: C10 H14 N2 O10 P2
Molecular weight: 384.173
Hydrogen Bond Acceptor: 11
Hydrogen Bond Donor: 4
Rotatable Bonds: 10
Heavy Atoms: 24
Systematic name
Program Version Descriptor
ACDLabs 10.04 [(2S,5R)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2,5-dihydrofuran-2-yl]methyl trihydrogen diphosphate
OpenEye OEToolkits 1.5.0 [(2S,5R)-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-2,5-dihydrofuran-2-yl]methyl phosphono hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C(=C1)C)C=C2
SMILES_CANONICAL CACTVS 3.341 CC1=CN([C@@H]2O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)C=C2)C(=O)NC1=O
SMILES CACTVS 3.341 CC1=CN([CH]2O[CH](CO[P](O)(=O)O[P](O)(O)=O)C=C2)C(=O)NC1=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 CC1=CN(C(=O)NC1=O)[C@H]2C=C[C@H](O2)CO[P@](=O)(O)OP(=O)(O)O
SMILES OpenEye OEToolkits 1.5.0 CC1=CN(C(=O)NC1=O)C2C=CC(O2)COP(=O)(O)OP(=O)(O)O
InChI InChI 1.03 InChI=1S/C10H14N2O10P2/c1-6-4-12(10(14)11-9(6)13)8-3-2-7(21-8)5-20-24(18,19)22-23(15,16)17/h2-4,7-8H,5H2,1H3,(H,18,19)(H,11,13,14)(H2,15,16,17)/t7-,8+/m0/s1
InChIKey InChI 1.03 LXCAIISEDMYORY-JGVFFNPUSA-N
Chemical Database Mapping
Database Reference ID
DrugBank DB02569
ChEMBL CHEMBL405730
PubChem 461279
ZINC ZINC000012502287