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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
9W9I
pdb_00009w9i
10.2210/pdb9w9i/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Tetrameric complex of kinesin-2 KIF3A/B/KAP3 and cargo APC
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
407310
Reported Resolution (Å)
2.90
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
Initial local fitting was done using Phenix dock-in-map tool.
Data Acquisition
Detector Type
GATAN K3 (6k x 4k)
Electron Dose (electrons/Å
2
)
64.7
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
JEOL CRYO ARM 200
Minimum Defocus (nm)
600
Maximum Defocus (nm)
1800
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
1.55
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
80000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
cryoSPARC
?
IMAGE ACQUISITION
SerialEM
?
CTF CORRECTION
cryoSPARC
?
MODEL FITTING
PHENIX
?
INITIAL EULER ASSIGNMENT
cryoSPARC
?
FINAL EULER ASSIGNMENT
cryoSPARC
?
CLASSIFICATION
cryoSPARC
?
RECONSTRUCTION
cryoSPARC
?
MODEL REFINEMENT
PHENIX
?
MODEL REFINEMENT
Coot
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?