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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
9MKB
pdb_00009mkb
10.2210/pdb9mkb/pdb
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FASTA
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MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
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Binary MMCIF Zipped(.gz)
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Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Escherichia phage T4
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
Ted Pella lacey carbon 400 mesh grids (catalog No: 01824) were used.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
69000
Reported Resolution (Å)
3.8
Resolution Method
FSC 0.143 CUT-OFF
Other Details
This is the composite map based on the asymmetric reconstruction focused on the phage neck, the 3-fold-symmetric reconstruction focused on the middle part of the tail, and the 3-fold-symmetric reconstruction focused on the baseplate. The resolutions of these reconstructions are 3.8A, 3.4A and 3.6A, respectively. (The number of particles is given for the asymmetric reconstruction focused on the phage neck.)
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
?
Refinement Protocol
?
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
The structures were fitted into the composite map using ChimeraX.
Data Acquisition
Detector Type
GATAN K3 (6k x 4k)
Electron Dose (electrons/Å
2
)
38
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
TFS KRIOS
Minimum Defocus (nm)
600
Maximum Defocus (nm)
2000
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
?
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?
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