ELECTRON MICROSCOPY

Sample

zebrafish OTOP1 in MSP2N2 nanodisc

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument FEI VITROBOT MARK IV
Cryogen Name ETHANE
Sample Vitrification Details ?
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 164766
Reported Resolution (Å) 3.73
Resolution Method FSC 0.143 CUT-OFF
Other Details final reported resolution of 3.73A was obtained through the Remote 3DFSC Processing server
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol AB INITIO MODEL
Refinement Target ?
Overall B Value ?
Fitting Procedure ?
Details ?
Data Acquisition
Detector Type GATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å2) 50.37
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model FEI TALOS ARCTICA
Minimum Defocus (nm) 800
Maximum Defocus (nm) 1800
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Specimen Holder Model OTHER
Nominal Magnification 36000
Calibrated Magnification ?
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 200
Imaging Details ?
Imaging Experiment
Task Software Package Version
PARTICLE SELECTION cryoSPARC 3.3.0
IMAGE ACQUISITION Leginon ?
CTF CORRECTION Gctf 1.06
MODEL FITTING Coot 0.9.8.7
MODEL REFINEMENT Coot 0.9.8.7
MODEL REFINEMENT PHENIX 1.20.1_4487
MODEL REFINEMENT Rosetta 2022.11
INITIAL EULER ASSIGNMENT cryoSPARC 3.3.0
FINAL EULER ASSIGNMENT cryoSPARC 3.3.0
CLASSIFICATION cryoSPARC 3.3.0
RECONSTRUCTION cryoSPARC 3.3.0
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION ?
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