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SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-15N HSQC 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
2 2D 1H-13C HSQC aliphatic 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
3 2D 1H-13C HSQC aromatic 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
4 3D HNCO 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
5 3D HNCA 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
6 3D CBCA(CO)NH 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
13 3D HNCACB 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
12 3D HBHA(CO)NH 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
11 3D C(CO)NH 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
10 3D HCCH-TOCSY 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
9 3D CCH-TOCSY 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
8 3D 1H-15N NOESY 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
7 3D 1H-13C NOESY aliphatic 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
14 3D 1H-13C NOESY aromatic 470 uM [U-13C; U-15N] nanobody, 5% D2O 20 5% D2O 6 1 298
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Bruker AVANCE III HD 600
NMR Refinement
Method Details Software
molecular dynamics Simulated Annealing, implicit water 5
NMR Ensemble Information
Conformer Selection Criteria target function
Conformers Calculated Total Number 100
Conformers Submitted Total Number 20
Representative Model 1 (target function)
Computation: NMR Software
# Classification Version Software Name Author
1 chemical shift assignment ? MAGRO Naohiro Kobayashi
2 structure calculation ? CYANA Guntert, Mumenthaler and Wuthrich
3 processing ? NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4 peak picking ? MAGRO Naohiro Kobayashi
5 refinement 12 Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
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