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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
9KBX
pdb_00009kbx
10.2210/pdb9kbx/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
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MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Complex of F-actin with GAS2-CH3 domain
Specimen Preperation
Sample Aggregation State
FILAMENT
Vitrification Instrument
?
Cryogen Name
ETHANE
Sample Vitrification Details
The grid was blotted for 4 s at force 10 and plunged into ethane immediately.
3D Reconstruction
Reconstruction Method
HELICAL
Number of Particles
412176
Reported Resolution (Å)
2.8
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
HELICAL
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
?
Overall B Value
111
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
GATAN K3 (6k x 4k)
Electron Dose (electrons/Å
2
)
48.93
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
TFS KRIOS
Minimum Defocus (nm)
1200
Maximum Defocus (nm)
2400
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
105000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
RELION
4.0b
IMAGE ACQUISITION
EPU
?
CTF CORRECTION
CTFFIND
4.1
MODEL FITTING
MDFF
?
INITIAL EULER ASSIGNMENT
RELION
4.0b
FINAL EULER ASSIGNMENT
RELION
4.0b
CLASSIFICATION
RELION
4.0b
RECONSTRUCTION
RELION
4.0b
MODEL REFINEMENT
PHENIX
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
CTF amplitude correction was performed following 3D reconstruction.
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