ELECTRON MICROSCOPY

Sample

Circularly permuted lumazine synthase twisted tube with 28 Angstrom gap between double strands

Specimen Preperation
Sample Aggregation State HELICAL ARRAY
Vitrification Instrument FEI VITROBOT MARK IV
Cryogen Name ETHANE
Sample Vitrification Details ?
3D Reconstruction
Reconstruction Method HELICAL
Number of Particles 192310
Reported Resolution (Å) 3.1
Resolution Method FSC 0.143 CUT-OFF
Other Details ?
Refinement Type
Symmetry Type HELICAL
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol RIGID BODY FIT
Refinement Target ?
Overall B Value ?
Fitting Procedure ?
Details Initial fitting was done using ChimeraX. Flexible fitting was done using Isolde.
Data Acquisition
Detector Type GATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å2) 42.44
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model TFS KRIOS
Minimum Defocus (nm) 900
Maximum Defocus (nm) 1500
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification ?
Calibrated Magnification 105000
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 300
Imaging Details ?
Imaging Experiment
Task Software Package Version
PARTICLE SELECTION cryoSPARC 4.4.1
IMAGE ACQUISITION EPU 2.10.0.1941REL
CTF CORRECTION cryoSPARC 4.4.1
MODEL FITTING UCSF ChimeraX 1.7
MODEL FITTING ISOLDE 1.7
MODEL REFINEMENT PHENIX 1.20.1-4487
INITIAL EULER ASSIGNMENT cryoSPARC 4.4.1
FINAL EULER ASSIGNMENT cryoSPARC 4.4.1
CLASSIFICATION cryoSPARC 4.4.1
RECONSTRUCTION cryoSPARC 4.4.1
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION ?
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