ELECTRON MICROSCOPY

Sample

Cytochrome BD-I oxidase

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument FEI VITROBOT MARK III
Cryogen Name ETHANE
Sample Vitrification Details ?
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 1277019
Reported Resolution (Å) 2.96
Resolution Method FSC 0.143 CUT-OFF
Other Details ?
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol BACKBONE TRACE
Refinement Target ?
Overall B Value ?
Fitting Procedure ?
Details ?
Data Acquisition
Detector Type GATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å2) 100
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model TFS KRIOS
Minimum Defocus (nm) 1000
Maximum Defocus (nm) 2400
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification 105000
Calibrated Magnification ?
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 300
Imaging Details ?
Imaging Experiment
Task Software Package Version
PARTICLE SELECTION cryoSPARC 4.3.0
IMAGE ACQUISITION EPU 2.1.0
CTF CORRECTION cryoSPARC 4.3.0
MODEL FITTING UCSF ChimeraX 1.7.1
MODEL REFINEMENT UCSF ChimeraX 1.7.1
MODEL REFINEMENT Coot 0.89
MODEL REFINEMENT PHENIX 1.21.1
FINAL EULER ASSIGNMENT cryoSPARC 4.3.0
CLASSIFICATION cryoSPARC 4.3.0
RECONSTRUCTION cryoSPARC 4.3.0
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION ?