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Organism Classification
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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
9FJY
ELECTRON MICROSCOPY
Sample
F-actin pointed end bound by DNase I and phalloidin.
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE-PROPANE
Sample Vitrification Details
3 seconds, force 0.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
178346
Reported Resolution (Å)
3.79
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
Real Space Refinement in Phenix.
Data Acquisition
Detector Type
GATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å
2
)
64.6
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
1200
Maximum Defocus (nm)
2500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
0.01
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
81000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
300 kV Titan Krios G2 microscope (Thermo Fisher Scientific) with an in-column Cs-corrector.
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
crYOLO
1.8
IMAGE ACQUISITION
EPU
?
CTF CORRECTION
CTFFIND
4.13
MODEL FITTING
UCSF ChimeraX
1.6.1
MODEL FITTING
Coot
0.9.8.1
MODEL REFINEMENT
Coot
0.9.8.1
MODEL REFINEMENT
PHENIX
1.21rc1_5015
INITIAL EULER ASSIGNMENT
cryoSPARC
v3.3.2
FINAL EULER ASSIGNMENT
cryoSPARC
v4.2.1
CLASSIFICATION
cryoSPARC
v4.2.1
RECONSTRUCTION
cryoSPARC
v4.2.1
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?