9FJF

ELECTRON MICROSCOPY

Sample

Lysosomal transporting complex of beta-glucocerebrosidase and lysosomal integral membrane protein 2 (LIMP-2) with two bound Pro-macrobodies.

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument FEI VITROBOT MARK IV
Cryogen Name ETHANE
Sample Vitrification Details ?
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 397385
Reported Resolution (Å) 3.7
Resolution Method FSC 0.143 CUT-OFF
Other Details ?
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol FLEXIBLE FIT
Refinement Target ?
Overall B Value ?
Fitting Procedure ?
Details Initial fitting with ChimeraX, manual flexible fitting with Coot, refinement with Phenix
Data Acquisition
Detector Type FEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å2) 50
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model TFS GLACIOS
Minimum Defocus (nm) 600
Maximum Defocus (nm) 2000
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS ?
Imaging Mode BRIGHT FIELD
Specimen Holder Model ?
Nominal Magnification 130000
Calibrated Magnification ?
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 200
Imaging Details ?
Imaging Experiment
Task Software Package Version
PARTICLE SELECTION cryoSPARC 4.2
IMAGE ACQUISITION EPU ?
MASKING UCSF ChimeraX 1.7.1
MASKING cryoSPARC 4.2
CTF CORRECTION cryoSPARC 4.2
MODEL FITTING Coot WinCoot 0.9.8.7
MODEL FITTING UCSF ChimeraX 1.7.1
MODEL REFINEMENT PHENIX ?
OTHER MODELLER ?
CLASSIFICATION cryoSPARC ?
RECONSTRUCTION cryoSPARC ?
MODEL REFINEMENT PHENIX 1.20.1_4487
MODEL FITTING Coot WinCoot 0.9.8.7
MODEL FITTING UCSF ChimeraX 1.7.1
MODEL REFINEMENT PHENIX 1.20.1_4487
MODEL FITTING Coot WinCoot 0.9.8.7
MODEL FITTING UCSF ChimeraX 1.7.1
MODEL REFINEMENT PHENIX 1.20.1_4487
RECONSTRUCTION PHENIX 1.20.1_4487
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION ?