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Organism Classification
Alphafold Collection
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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
9F6Z
pdb_00009f6z
10.2210/pdb9f6z/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Homodimeric form of NDST1
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
The grid was blotted for 4 s with a blot force of 0
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
221316
Reported Resolution (Å)
4.5
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
FlexEM in CCP-EM suite
Data Acquisition
Detector Type
GATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å
2
)
38.9
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
TFS GLACIOS
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
2200
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
36000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
cryoSPARC
3.3.1
IMAGE ACQUISITION
SerialEM
?
CTF CORRECTION
cryoSPARC
3.3.1
INITIAL EULER ASSIGNMENT
cryoSPARC
3.3.1
FINAL EULER ASSIGNMENT
cryoSPARC
3.3.1
RECONSTRUCTION
cryoSPARC
Non-Uniform Refinement
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?