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Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
9F5P
ELECTRON MICROSCOPY
Sample
Poliovirus 2
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE-PROPANE
Sample Vitrification Details
4 ul of sample blotted for 3.5 seconds with -15 blot force on FEI Vitrobot mark IV.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
3149
Reported Resolution (Å)
2.6
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Post-processing was applied with a b-factor of -52.2 A2 in RELION.
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Cross-correlation coefficient
Overall B Value
?
Fitting Procedure
?
Details
Initial model was rigid body fitted using UCSF chimera and Coot. Global minimization and B-factor refinement was performed in real space using phenix_real.space.refine.
Data Acquisition
Detector Type
GATAN K3 (6k x 4k)
Electron Dose (electrons/Å
2
)
35.0
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
800
Maximum Defocus (nm)
2300
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
DARK FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
?
Calibrated Magnification
47170
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
Preliminary grid screening was performed on a Glacios 200 kV microscope.
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
crYOLO
?
CTF CORRECTION
CTFFIND
4.1
MODEL FITTING
UCSF Chimera
1.16
MODEL FITTING
Coot
0.9.6
INITIAL EULER ASSIGNMENT
RELION
3.1.1
FINAL EULER ASSIGNMENT
RELION
3.1.1
CLASSIFICATION
RELION
3.1.1
RECONSTRUCTION
RELION
3.1.1
MODEL REFINEMENT
PHENIX
1.20.1_4487-000
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?