SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-1H NOESY 10 mM sodium phosphate, 300 uM tRNA-Arg-UCU-4-1 Anticodon stem-loop, 50 uM EDTA, 90% H2O/10% D2O 10 90% H2O/10% D2O 6.3 1 288
2 2D 1H-1H TOCSY 10 mM sodium phosphate, 300 uM tRNA-Arg-UCU-4-1 Anticodon stem-loop, 50 uM EDTA, 90% H2O/10% D2O 10 90% H2O/10% D2O 6.3 1 288
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Bruker AVANCE III 800
NMR Refinement
Method Details Software
simulated annealing ? 3
NMR Ensemble Information
Conformer Selection Criteria structures with the least restraint violations
Conformers Calculated Total Number 300
Conformers Submitted Total Number 15
Representative Model 1 (lowest energy)
Computation: NMR Software
# Classification Version Software Name Author
4 collection ? TopSpin Bruker Biospin
5 processing ? NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
1 chemical shift assignment ? NMRFAM-SPARKY University of Madison-Wisconsin
2 structure calculation ? Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman
3 refinement ? Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman