ELECTRON MICROSCOPY

Sample

TSC:WIPI3 lysosomal recruitment complex (composite map)

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument FEI VITROBOT MARK IV
Cryogen Name ETHANE
Sample Vitrification Details ?
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 200000
Reported Resolution (Å) 2.9
Resolution Method FSC 0.143 CUT-OFF
Other Details The global resolution of this composite is estimated based on the voxel average of focused reconstructions.
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol OTHER
Refinement Target Cross-correlation coefficient
Overall B Value 96.40
Fitting Procedure ?
Details ?
Data Acquisition
Detector Type GATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å2) 46.54
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model FEI TITAN KRIOS
Minimum Defocus (nm) 500
Maximum Defocus (nm) 3000
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification 105000
Calibrated Magnification ?
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 300
Imaging Details ?
Imaging Experiment
Task Software Package Version
PARTICLE SELECTION cryoSPARC 4.0.1
PARTICLE SELECTION Topaz ?
PARTICLE SELECTION crYOLO ?
IMAGE ACQUISITION EPU 2.12.1.2782
CTF CORRECTION CTFFIND ?
MODEL FITTING ISOLDE ?
INITIAL EULER ASSIGNMENT cryoSPARC 4.0.1
FINAL EULER ASSIGNMENT cryoSPARC 4.0.1
FINAL EULER ASSIGNMENT RELION 4.0
CLASSIFICATION RELION 4.0
MODEL REFINEMENT PHENIX ?
MODEL REFINEMENT Coot ?
MODEL REFINEMENT ISOLDE ?
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION ?
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