SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-1H NOESY 2.0 mM 5'-GAGGAGUCUCA-3', 70 mM NaCl, 30 mM NaH2PO4/Na2HPO4, 0.1 mM EDTA, 95% H2O/5% D2O 100 95% H2O/5% D2O 6.1 1 274
2 2D 1H-1H TOCSY 2.0 mM 5'-GAGGAGUCUCA-3', 70 mM NaCl, 30 mM NaH2PO4/Na2HPO4, 0.1 mM EDTA, 95% H2O/5% D2O 100 95% H2O/5% D2O 6.1 1 274
3 2D 1H-13C HSQC 2.0 mM 5'-GAGGAGUCUCA-3', 70 mM NaCl, 30 mM NaH2PO4/Na2HPO4, 0.1 mM EDTA, 95% H2O/5% D2O 100 95% H2O/5% D2O 6.1 1 274
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Varian UNITY INOVA 600
NMR Refinement
Method Details Software
simulated annealing 24 distance restraints from hydrogen bonds, 132 dihedral angle restraints 5
NMR Ensemble Information
Conformer Selection Criteria structures with the lowest constraint energy
Conformers Calculated Total Number 600
Conformers Submitted Total Number 30
Representative Model 1 (lowest constraint energy)
Computation: NMR Software
# Classification Version Software Name Author
1 collection 6.1C VNMR Varian
2 processing ? NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3 chemical shift assignment 1.2 NMRFAM-SPARKY Lee, Tonelli, Markley
4 peak picking 1.2 NMRFAM-SPARKY Lee, Tonelli, Markley
5 refinement v16 Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman
6 structure calculation v16 Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman