Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
8XZ2
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Ionic Strength
Solvent
pH
Pressure
Temprature (K)
1
1H/15N TROSY IPAP
0.154 mM [U-13C; U-15N; U-2H] VanX, 90% H2O/10% D2O
50
90% H2O/10% D2O
7
1
303
2
Transfer cross saturation
0.154 mM [U-13C; U-15N; U-2H] VanX, 90% H2O/10% D2O
50
90% H2O/10% D2O
7
1
303
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
NMR Refinement
Method
Details
Software
molecular dynamics
In total, 132 RDC-based orientational restraints and seven TCS-based intersubunit ambiguous restraints were imposed in the calculations. The latter restraints involved residues in segments B (selected from residues exhibiting remarkable TCS effects) and C (selected from residues exhibiting both remarkable and minor TCS effects). These constraints were applied c2-symmetrically between the subunits B and C in the calculations.
1
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
200
Conformers Submitted Total Number
4
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
structure calculation
2.4
HADDOCK
Bonvin
2
data analysis
?
PALES
Zweckstetter M and Bax A
3
peak picking
?
NMRFAM-SPARKY
Lee W, Tonelli M, and Markley JL.
4
processing
?
NMRPipe
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax