Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
8X0D
pdb_00008x0d
10.2210/pdb8x0d/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Human FL Metabotropic glutamate receptor 5, mGlu5-5M
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
Blotting time of 5 seconds and blot force of 10
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
41886
Reported Resolution (Å)
3.5
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
RECIPROCAL
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
95.3
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
FEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å
2
)
50
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
500
Maximum Defocus (nm)
1200
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
165000
Calibrated Magnification
192572
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
Images were collected with Aberration-free image shift and Fringe-free imaging with a Selectris energy filter in EFTEM mode
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
Topaz
?
IMAGE ACQUISITION
EPU
?
CTF CORRECTION
CTFFIND
4.1.14
CTF CORRECTION
RELION
4.0
CTF CORRECTION
cryoSPARC
?
MODEL FITTING
UCSF Chimera
1.15
MODEL FITTING
Coot
0.9.8.7
RECONSTRUCTION
cryoSPARC
?
MODEL REFINEMENT
PHENIX
1.20.1-4487
MODEL REFINEMENT
REFMAC
5.8.0411
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?