Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
8WU4
ELECTRON MICROSCOPY
Sample
Native H. thermoluteolus GroEL
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
blot force 10, blot time 15 s
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
40366
Reported Resolution (Å)
3.3
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
Initial fitting was done using UCSF ChimeraX
Data Acquisition
Detector Type
FEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å
2
)
50
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TALOS ARCTICA
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
2500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
120000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
IMAGE ACQUISITION
EPU
?
CTF CORRECTION
cryoSPARC
4.3
MODEL FITTING
UCSF ChimeraX
1.6
INITIAL EULER ASSIGNMENT
cryoSPARC
4.3
FINAL EULER ASSIGNMENT
cryoSPARC
4.3
CLASSIFICATION
cryoSPARC
4.3
RECONSTRUCTION
cryoSPARC
4.3
MODEL REFINEMENT
PHENIX
1.2.0
MODEL REFINEMENT
ISOLDE
1.6
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?