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Organism Classification
Alphafold Collection
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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
8W7M
ELECTRON MICROSCOPY
Sample
replisome complex in state V
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
blot with filter paper for 3-4 seconds before plunging.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
28871
Reported Resolution (Å)
4.12
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
AB INITIO MODEL
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
GATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å
2
)
53
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
2500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
81000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
Gautomatch
v0.56
IMAGE ACQUISITION
EPU
2.10.0
CTF CORRECTION
Gctf
v1.18
MODEL FITTING
UCSF Chimera
?
MODEL REFINEMENT
PHENIX
?
MODEL REFINEMENT
Coot
?
INITIAL EULER ASSIGNMENT
cryoSPARC
v3.0.1
INITIAL EULER ASSIGNMENT
cryoSPARC
v2.15.0
FINAL EULER ASSIGNMENT
cryoSPARC
v3.0.1
FINAL EULER ASSIGNMENT
cryoSPARC
v2.15.0
RECONSTRUCTION
cryoSPARC
v3.0.1
RECONSTRUCTION
cryoSPARC
v2.15.0
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?