ELECTRON MICROSCOPY

Sample

Hydrogen Peroxide-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument FEI VITROBOT MARK IV
Cryogen Name ETHANE
Sample Vitrification Details ?
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 349552
Reported Resolution (Å) 2.31
Resolution Method FSC 0.143 CUT-OFF
Other Details ?
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol FLEXIBLE FIT
Refinement Target ?
Overall B Value ?
Fitting Procedure ?
Details Rounds of automatic real space refine in PHENIX with manual real space refine in coot
Data Acquisition
Detector Type GATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å2) 60
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model FEI TITAN KRIOS
Minimum Defocus (nm) -800
Maximum Defocus (nm) 2800
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS ?
Imaging Mode BRIGHT FIELD
Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification 22500
Calibrated Magnification ?
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 300
Imaging Details ?
Imaging Experiment
Task Software Package Version
PARTICLE SELECTION cryoSPARC 4.3.1
IMAGE ACQUISITION SerialEM 4.0.25
MASKING cryoSPARC 4.3.1
CTF CORRECTION CTFFIND 4
MODEL FITTING UCSF ChimeraX 1.6
MODEL REFINEMENT PHENIX 1.20.1
MODEL REFINEMENT Coot 0.9.8.7
INITIAL EULER ASSIGNMENT cryoSPARC 4.3.1
FINAL EULER ASSIGNMENT cryoSPARC 4.3.1
CLASSIFICATION cryoSPARC 4.3.1
RECONSTRUCTION cryoSPARC 4.3.1
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
NONE ?