ELECTRON MICROSCOPY

Sample

Complex of DDB1deltaB-DDA1-DCAF5

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument LEICA EM GP
Cryogen Name NITROGEN
Sample Vitrification Details ?
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 547805
Reported Resolution (Å) 2.63
Resolution Method FSC 0.143 CUT-OFF
Other Details ?
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol OTHER
Refinement Target ?
Overall B Value 97
Fitting Procedure ?
Details ?
Data Acquisition
Detector Type GATAN K3 (6k x 4k)
Electron Dose (electrons/Å2) 53.349
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model FEI TALOS ARCTICA
Minimum Defocus (nm) 1500
Maximum Defocus (nm) 2500
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification 36000
Calibrated Magnification ?
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 200
Imaging Details ?
Imaging Experiment
Task Software Package Version
PARTICLE SELECTION Topaz 0.2.4
IMAGE ACQUISITION SerialEM ?
CTF CORRECTION cryoSPARC v3.2
MODEL FITTING UCSF ChimeraX 1.4
MODEL FITTING Coot 0.9
INITIAL EULER ASSIGNMENT cryoSPARC v3.2
FINAL EULER ASSIGNMENT cryoSPARC v3.2
CLASSIFICATION cryoSPARC v3.2
RECONSTRUCTION cryoSPARC v4.1.2
MODEL REFINEMENT PHENIX 1.19.2
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION implemented in cryoSPARCv3.2