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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
8S5E
pdb_00008s5e
10.2210/pdb8s5e/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Heptameric complex of Arf1 with GSP and Mg
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
LEICA EM GP
Cryogen Name
ETHANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
485140
Reported Resolution (Å)
3.1
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
94.1
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
FEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å
2
)
60
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
TFS GLACIOS
Minimum Defocus (nm)
600
Maximum Defocus (nm)
2800
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
OTHER
Nominal Magnification
92000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
cryoSPARC
v4.3.1
IMAGE ACQUISITION
EPU
2.2.0.65REL
CTF CORRECTION
cryoSPARC
v4.3.1
MODEL FITTING
PHENIX
1.21_5187
MODEL FITTING
Coot
0.9
MODEL FITTING
ISOLDE
1.6
INITIAL EULER ASSIGNMENT
cryoSPARC
v4.3.1
FINAL EULER ASSIGNMENT
cryoSPARC
v4.3.1
CLASSIFICATION
cryoSPARC
v4.3.1
RECONSTRUCTION
cryoSPARC
v4.3.1
MODEL REFINEMENT
PHENIX
1.21_5187
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?
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