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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
8S5C
pdb_00008s5c
10.2210/pdb8s5c/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Arf1 coated membrane tubules
Specimen Preperation
Sample Aggregation State
HELICAL ARRAY
Vitrification Instrument
LEICA EM GP
Cryogen Name
ETHANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
HELICAL
Number of Particles
127727
Reported Resolution (Å)
3.10
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
HELICAL
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
FEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å
2
)
21
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
TFS GLACIOS
Minimum Defocus (nm)
600
Maximum Defocus (nm)
2800
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
OTHER
Nominal Magnification
92000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
cryoSPARC
v4.3.1, v4.4.2
IMAGE ACQUISITION
EPU
2.2.0.65REL
CTF CORRECTION
cryoSPARC
v4.3.1, v4.4.2
MODEL FITTING
ISOLDE
?
CLASSIFICATION
cryoSPARC
v4.3.1, v4.4.2
RECONSTRUCTION
cryoSPARC
v4.3.1, v4.4.2
MODEL REFINEMENT
PHENIX
1.21-5187
MODEL REFINEMENT
Coot
0.9.7 EL
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?
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