8R8P

SOLID-STATE NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-13C HSQC aliphatic 10 mM MES, 50 mM sodium chloride, 1 mM RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), 1 mM RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3'), 1.5 mM SCX, 100% D2O 50 100% D2O 5.5 atm 293
2 2D 1H-13C HSQC aromatic 10 mM MES, 50 mM sodium chloride, 1 mM RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), 1 mM RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3'), 1.5 mM SCX, 100% D2O 50 100% D2O 5.5 atm 293
3 2D 1H-1H NOESY 10 mM MES, 50 mM sodium chloride, 1 mM RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), 1 mM RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3'), 1.5 mM SCX, 100% D2O 50 100% D2O 5.5 atm 293
4 2D 1H-1H TOCSY 10 mM MES, 50 mM sodium chloride, 1 mM RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), 1 mM RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3'), 1.5 mM SCX, 100% D2O 50 100% D2O 5.5 atm 293
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Bruker AVANCE III HD 800
NMR Refinement
Method Details Software
simulated annealing ? 1
NMR Ensemble Information
Conformer Selection Criteria structures with the least restraint violations
Conformers Calculated Total Number 50
Conformers Submitted Total Number 15
Representative Model 1 (fewest violations)
Computation: NMR Software
# Classification Version Software Name Author
1 refinement ? Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2 structure calculation 3.98 CYANA Guntert, Mumenthaler and Wuthrich
3 chemical shift assignment ? CARA Keller and Wuthrich
4 peak picking ? CARA Keller and Wuthrich