ELECTRON MICROSCOPY

Sample

Human T-cell leukemia virus type I

Specimen Preperation
Sample Aggregation State HELICAL ARRAY
Vitrification Instrument LEICA EM GP
Cryogen Name ETHANE
Sample Vitrification Details Grids coated with 2nm continuous carbon layer
3D Reconstruction
Reconstruction Method SUBTOMOGRAM AVERAGING
Number of Particles 29500
Reported Resolution (Å) 4.0
Resolution Method FSC 0.143 CUT-OFF
Other Details ?
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol RIGID BODY FIT
Refinement Target ?
Overall B Value ?
Fitting Procedure ?
Details ?
Data Acquisition
Detector Type GATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å2) 3.5
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model FEI TITAN KRIOS
Minimum Defocus (nm) 1000
Maximum Defocus (nm) 4000
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification 80000
Calibrated Magnification ?
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 300
Imaging Details ?
Imaging Experiment
Task Software Package Version
VOLUME SELECTION subTOM ?
VOLUME SELECTION Warp 1.0.9
VOLUME SELECTION MATLAB R2018b
IMAGE ACQUISITION SerialEM ?
CTF CORRECTION Warp 1.0.9
MODEL FITTING UCSF Chimera ?
IMAGE ACQUISITION SerialEM ?
CTF CORRECTION CTFFIND 4.1.10
CTF CORRECTION NOVACTF ?
FINAL EULER ASSIGNMENT Warp 1.0.9
RECONSTRUCTION Warp 1.0.9
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION ?