ELECTRON MICROSCOPY

Sample

Anaerobic ribonucleotide reductase from Prevotella copri in its dimeric, dATP-bound state

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument FEI VITROBOT MARK IV
Cryogen Name ETHANE
Sample Vitrification Details blot force 1, 5s blot time
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 1009021
Reported Resolution (Å) 2.73
Resolution Method FSC 0.143 CUT-OFF
Other Details ?
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol FLEXIBLE FIT
Refinement Target correlation coefficient
Overall B Value 40
Fitting Procedure ?
Details Manual fitting was done using Coot and automatic real space refinement used phenix.refine
Data Acquisition
Detector Type GATAN K3 (6k x 4k)
Electron Dose (electrons/Å2) 46
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model TFS KRIOS
Minimum Defocus (nm) 1000
Maximum Defocus (nm) 3400
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification 105000
Calibrated Magnification ?
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 300
Imaging Details ?
Imaging Experiment
Task Software Package Version
PARTICLE SELECTION cryoSPARC 3.2.0
IMAGE ACQUISITION EPU 2.8.1
CTF CORRECTION cryoSPARC 3.2.0
MODEL FITTING Coot 0.9.8.7
INITIAL EULER ASSIGNMENT cryoSPARC 3.3.2
FINAL EULER ASSIGNMENT cryoSPARC 4.1.2
CLASSIFICATION cryoSPARC 3.3.2
RECONSTRUCTION cryoSPARC 4.1.2
MODEL REFINEMENT PHENIX 1.19.2-4158
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION Patch CTF correction in cryoSPARC